Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs12755214 chr1:152906716 A/C 0.000131 501 31.47 34.4 37.7 KM Plot
THCA rs12756264 chr1:152914389 G/A 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs12758478 chr1:152999973 T/G 0.00014 502 31.6 31.6 37.7 KM Plot
THCA rs12779406 chr10:29325253 T/A 2.88E-9 499 31.77 30.38 29.28 KM Plot
THCA rs12812451 chr12:104619142 C/T 1.46E-5 497 31.88 28.33 23.83 KM Plot
THCA rs12882271 chr14:74680338 C/G 6.52E-6 496 31.5 32.43 32.03 KM Plot
THCA rs12899649 chr15:40281684 C/T 0.000128 503 32.77 31.55 31.5 KM Plot
THCA rs12912442 chr15:40280539 G/A 0.000136 502 31.5 31.4 32.77 KM Plot
THCA rs12941552 chr17:49216187 C/T 0.0001 480 31.43 32.1 22.13 KM Plot
THCA rs12941574 chr17:43030679 C/T 0.00013 503 26.05 32.62 31.67 KM Plot
THCA rs12972726 chr19:15063348 C/T 0.000134 491 31.45 33.7 30.83 KM Plot
THCA rs12973581 chr19:15063349 A/G 0.000134 491 31.45 33.7 30.83 KM Plot
THCA rs12986049 chr19:15063332 G/C 0.000134 491 31.45 33.7 30.83 KM Plot
THCA rs12994456 chr2:87026834 A/G 1.01E-6 501 32.6 28.43 32.1 KM Plot
THCA rs12998251 chr2:29052256 T/C 0.000138 502 38.87 30.97 31.68 KM Plot